CNV Analysis Toolkit Documentation
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Introduction
------------
The CNV analysis toolkit was first designed to accomodate the needs of a
specific project that used monozygotic twins quartets in order to assess the
efficiency of different CNV genotyping methods.
This software has been made publicly available for transparency related
matters and in the hope that some utilities be useful in similar studies.



Contents
========

.. toctree::
   :maxdepth: 2

   bed
   cnv_counter
   cnv_db
   cnv_struct
   compare_dgv
   de_novo_germinal
   generate_cnv_graph
   mendelian
   merge_cnvs
   parsers
   plot_cnv_size_dgv_ro
   plot_cnv_size_distribution
   plot_distance_distribution
   plot_ro
   plot_size_doc_scatter
   samples_db
   validation
   venn
   
Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`