parsers.breakdancer

class parsers.breakdancer.Parser(family_root)

Creates the CNV dictionary for a given family for calls from the BreakDancer algorithm.

11. Chen, JW. Wallis, MD. McLellan, et al. (2009). BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat. Methods, 6:677–81.

parsers.breakdancer.clean(cnvs)

Cleans cnvs by removing instances with the same start position by keeping the CNV with the largest confidence score.

This method is automatically called when using the get_cnvs method.