de_novo_germinal tool to filter out de novo variants

de_novo_germinal.main(args)[source]

Filters out the germline de novo CNVs from a given dataset and writes different summary files.

Multiple files are generated: Pickle files after merge and BED files for visualization will be created for every family. The number of de novo CNVs will be appended to the de_novo_germinal_summary.txt file in the form “family_id [TAB] number of gains [TAB] number of losses”.

Previous topic

compare_dgv script to check DGV overlap

Next topic

generate_cnv_graph a data structure to handle different CNV signatures in a family

This Page