pyGenClean is an informatics tool to facilitate and standardize the genetic data clean up pipeline with genotyping array data. In conjunction with a source batch-queuing system, the tool minimizes data manipulation errors, it accelerates the completion of the data clean up process and it provides informative graphics and metrics to guide decision making for statistical analysis.

pyGenClean is an open source Python 2.7 code and is freely available, along with documentation and examples. It is a command tool working on both Linux and Windows operating systems.

If you use pyGenClean in any published work, please cite the scientific paper mentioned in the bibliography, at the end of this page.



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