The cnv_counter utility to count the number of CNVs corresponding to a given criterion

cnv_counter.main(args)[source]

This script is used for quick assessement of the amount and size distribution of CNVs according to a reciprocal overlap filter.

The possible arguments for this scripts are threshold for lower and/or upper RO thresholds, or an exact RO value for filtering. A --size_stats argument can be used to display the mean and std size for the filtered CNVs.

The output is of the form:

FamID, number of match, total, percentage, mean_size, std_size

Previous topic

The bed utility to generate UCSC bed files

Next topic

cnv_db: DGV database interface

This Page